- Rector's Office
- Office of the Vice President for Academics
- Library Services Department
- Registrar's Department
- Graduate School and Professional Services
- School of Business, Management, and Accountancy
- School of Computer Studies and Technology
- School of Education, Arts, and Sciences
- School of Engineering
- School of Nursing
- School of Tourism and Hospitality Management
- Basic Education Department
- Senior High School Department
- Office of the Vice President for Research and Development
- Office of the Vice President for Administration and Planning
- Office of the Vice President for Finance
- Accounting Department
- Auxiliary Business Department
- Management Accounting and Finance Services Department
- Management Information Systems Department
- Property Management and General Services Department
- Office of the Vice President for Religious Education, Mission and Identity
- Campus Ministry Department
- Community and Extension Services Department
- Culture and Arts Department
- Religious Education Department
- Student Affairs and Development Department
- Office of the Vice President for External Affairs and International Relations
- Schools