- Rector's Office
- Audit Services
- Planning, Development, and Innovation
- Center for Planning and Organizational Transformation (POT)
- Center for Program and Services Innovation and Professional Development and Enhancement (PSI/PDE)
- Registrar's Department
- Secretary General
- Office of the Vice President for Academics
- Academic Research Department (ARD)
- Library Services Department
- Basic Education Department
Grade School to Junior High School (BED GS-JHS) - BED Senior High School Department (BED SHS)
- Graduate School (GS)
- School of Business, Management, and Accountancy (SBMA)
- School of Computer Studies and Technology (SCST)
- School of Education, Arts, and Sciences (SEAS)
- School of Engineering and Architecture (SEA)
- School of Nursing (SN)
- School of Tourism and Hospitality Management (STHM)
- Office of the Vice President for Administration
- Office of the Vice President for Information Services
- Admissions, Student Assistance, and Scholarship Office (ASAS)
- Management Information Services Department (MISD)
- Marketing Services Department (MSD)
- Office of the Vice President for Research and Collaboration
- Office of the Vice President for Finance
- Accounting Services Department (ASD)
- Financial Services Department (FSD)
- Auxiliary Business Office (ABO)
- Office of the Vice President for Religious Education, Mission and Identity
- Schools